YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM115_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRALPGARQ HLGAILSSAS VVVKALCAAV LFLYLLSFAV DTGCLAVTPG YLFPPNFWIW  60
   61 TLATHGLMEQ HVWDVAISLA TVVVAGRLLE PLWGALELLI FFSVVNVSVG LLGAFAYLLT 120
  121 YMASFNLVYL FTVRIHGALG FLGGVLVALK QTMGDCVVLR VPQVRVSVVP MLLLGLLLLL 180
  181 RLATLLQSPA LASYGFGLIS SWVYLRFYQR HSRGRGDMAD HFAFATFFPE ILQPVVGLLA 240
  241 NLVHGLLVKV KICQKTVKRY DVGAPSSITI SLPGTDPQDA ERRRQLALKA LNERLKRVED 300
  301 QSVWPSMDDD EEEAGAKVDS PMPSDKAPTL PGKGAVPESS LITFEAAPPT L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	40	0.85
Non-Cytoplasmic	41	69	0.69
Transmembrane Helix	70	89	0.87
Cytoplasmic	90	97	0.82
Transmembrane Helix	98	119	0.94
Non-Cytoplasmic	120	129	0.72
Transmembrane Helix	130	149	0.92
Cytoplasmic	150	163	0.75
Transmembrane Helix	164	183	0.90
Non-Cytoplasmic	184	189	0.68
Transmembrane Helix	190	208	0.86
Cytoplasmic	209	351	0.77