YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JAGN1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAGPRAA GTDGSDFQHR ERVAMHYQMS VTLKYEIKKL IYVHLVIWLL LVAKMSVGHL  60
   61 RLLSHDQVAM PYQWEYPYLL SVVPSLLGLL SFPRNNISYL VLSMISMGLF SIAPLIYGSM 120
  121 EMFPAAQQLY RHGKAYRFLF GFSAVSVMYL VLVLAVQVHA WQLYYSKKLL DSWFTSTQEK 180
  181 KRK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	62	0.86
Non-Cytoplasmic	63	75	0.80
Transmembrane Helix	76	92	0.57
Cytoplasmic	93	96	0.48
Transmembrane Helix	97	118	0.91
Non-Cytoplasmic	119	137	0.50
Transmembrane Helix	138	161	0.88
Cytoplasmic	162	183	0.53