YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CKLF8_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPQRARSQ TVTTTASSFA ENFSTTSSSF SYDREFLRTL PGLLIVAEIV LGLLVWTLIA  60
   61 GTEYFRVPAF GWVMFVAVFY WVLTVFFLII YLTMTYTRIP QVPWTTVGLW FNGSAFALYL 120
  121 SAAIVDASSV SPERDSHNFN SWAASSFFAF LVTICYAGNT YFSFIAWRSR TIQ

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	69	0.83
Transmembrane Helix	70	92	0.90
Cytoplasmic	93	103	0.77
Transmembrane Helix	104	125	0.89
Non-Cytoplasmic	126	142	0.88
Transmembrane Helix	143	165	0.90
Cytoplasmic	166	173	0.88