YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76646706
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLIPGASQ VWALGDRLRT GLSCHQPLPL ALTQGPLPWL RIRKEQKGAM ATVPGRDPSE  60
   61 PLPVSEGACA GTPSQDPALV LQCRCLHSPA SQCQSTCTSV SPVLVTGSGC VVITTTQRSL 120
  121 VFPFLIRGGK PMPLYAFLLA FIFCTYNGYL QSRYLSQYAV YADDWLSDPR FLTGSALWLI 180
  181 GMLINIHSDH VLRNLRKPGE TGYKIPRGGL FEYISAANYF GEVVEWCGYA LASWSIQGWA 240
  241 FAVFTFCVLF TRAQQHHKWY HEKFEDYPKF RKIMIPFLV

Type	Start	End	Confidence
Cytoplasmic	1	131	0.75
Transmembrane Helix	132	150	0.93
Non-Cytoplasmic	151	170	0.67
Transmembrane Helix	171	188	0.84
Cytoplasmic	189	204	0.56
Transmembrane Helix	205	221	0.45
Non-Cytoplasmic	222	229	0.57
Transmembrane Helix	230	251	0.81
Cytoplasmic	252	279	0.87