YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76646522
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRCQQSPV LAGSATLAAL GALVLYLAEP SGYGKYSENL MPVAIRLPAR AAWFLQELPS  60
   61 FAVPAGILAG QPSSLLGPPA TVLLGLFCAH YFHRTFVYSL LTRGRPFPVV FLFRGFVFCM 120
  121 GNGLLQGYYL VYCAEYPAEW YTDIRFSLGI FLFILGMGIN IHSDYILRQL RKPGEIIYRI 180
  181 PQGGLFTYVS GANFLGEIIE WIGYALASWS LPALAFAFFS LCFLGLRAFH HHRFYLKMFD 240
  241 DYPKSRRALI PFIF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.75
Transmembrane Helix	9	28	0.85
Non-Cytoplasmic	29	74	0.75
Transmembrane Helix	75	93	0.90
Cytoplasmic	94	109	0.84
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	143	0.86
Transmembrane Helix	144	166	0.86
Cytoplasmic	167	177	0.90
Transmembrane Helix	178	199	0.82
Non-Cytoplasmic	200	208	0.58
Transmembrane Helix	209	229	0.91
Cytoplasmic	230	254	0.97