YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76646518
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRDSRRRL TWCLVRISRP DLSSGGSISP ARLVLPGAAP QEGSGGCSDL AFWGCREPAR  60
   61 ELSASLALLT AAAAAAGALA AASCVPSLPG TAPGLRTRAP NLLGGAPRSC PRPGWVSWLG 120
  121 LGAPGVNVQL GVCGDRIRGA AAGRDSKMKL WDVVAVCLVL LHTASAFPLP AGKRPPEAPA 180
  181 EDRSLGRRRA PFALSSDSNM PEDYPDQFDD VMDFIQATIR RLKRSPEKQM AVLPRRERHR 240
  241 QGAAASPESA RGKGRRGQRG RNRGCVLTAV HLNVTDLGLG YETKEELIFR YCSGSCDAAE 300
  301 TMYDKILKNL SKSRRLVSDK VGQACCRPIA FDDDLSFLDD NLVYHILRKH SAKRCGCI

Type	Start	End	Confidence
Cytoplasmic	1	65	0.89
Transmembrane Helix	66	85	0.90
Non-Cytoplasmic	86	113	0.86
Transmembrane Helix	114	133	0.77
Cytoplasmic	134	149	0.76
Transmembrane Helix	150	169	0.79
Non-Cytoplasmic	170	358	0.92