YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76646233
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	58	0.53
Transmembrane Helix	59	79	0.88
Cytoplasmic	80	96	0.90
Transmembrane Helix	97	118	0.89
Non-Cytoplasmic	119	124	0.73
Transmembrane Helix	125	145	0.80
Cytoplasmic	146	153	0.65
Transmembrane Helix	154	170	0.91
Non-Cytoplasmic	171	201	0.75
Transmembrane Helix	202	222	0.84
Cytoplasmic	223	240	0.87
Transmembrane Helix	241	261	0.92
Non-Cytoplasmic	262	268	0.86
Transmembrane Helix	269	290	0.92
Cytoplasmic	291	302	0.91
Transmembrane Helix	303	324	0.88
Non-Cytoplasmic	325	343	0.91
Transmembrane Helix	344	364	0.93
Cytoplasmic	365	420	0.97
Transmembrane Helix	421	441	0.94
Non-Cytoplasmic	442	451	0.79
Transmembrane Helix	452	471	0.94
Cytoplasmic	472	487	0.81
Transmembrane Helix	488	507	0.91
Non-Cytoplasmic	508	522	0.81
Transmembrane Helix	523	545	0.91
Cytoplasmic	546	556	0.90
Transmembrane Helix	557	579	0.93
Non-Cytoplasmic	580	584	0.88
Transmembrane Helix	585	607	0.92
Cytoplasmic	608	731	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKYGGDVL AGHGGGGGSG LGPVDVPSAR LTKYIVLLCF TKFLKAVGLF ESYDLLKVVH  60
   61 VVQFIFILKL GTAFFMVLFQ KPFSSGKSIT KRQWIKIFKH AMAGCVISLL WFFGLTLCGP 120
  121 LRTLLLFEHS DIVVISLLSV LFTSSGGGPA KTRGAAFFII AVICLLLFDN DDLMAKMAEH 180
  181 PEGHHDSALT HMLYTAIAFL GVADHKGGVL LLVLALCCKV GFHTASRKLS IDVGGAKRLQ 240
  241 ALSQIISVLL LCPWVIVLSV TTESKVDSWF SLIMPFSTVI FFVMILDFYV ESICSVKMEV 300
  301 SKCARYGSFP IFISALLFGK FWTHPIAGQL RAVDRAALQE GTEHVLSGGV VVSAVFFTLS 360
  361 ANILSSPSKK GQKGTLIGYS PEGTPLYNFM GDAFQHSSQS IPRFIKESLK QILEENDSRQ 420
  421 IFYFLCLNLL FTFVELFYGV LTNSLGLISD GFHMLFDCSA LVMGLFAALM SRWKATRIFS 480
  481 YGYGRIEILS GFINGLFLVV IAFFVFMESV ARLIDPPELD THMLTVISVG GLIVNLIGIC 540
  541 AFSHAHNHSH GASQGSCVFL HVLADTLGSI GVIVSTILIE QFGWFIADPL CSLFIAVLIF 600
  601 LSVVPLIKDA CQVLLLRLPP EYEKELHIAL EKLQKIEGLI SYRDPHFWRH SASIVAGTIH 660
  661 IQVTSDVLEQ RIVQQVTGIL KDAGVNNLTI QVEKEAYFQH MSGLSTGFHD VLTMTKQMES 720
  721 MKYYKDGTYI M