YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76645766
Protein type:	Globular with Signal Peptide
Type Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMLPGTITG AQCAAPLSPG AGSGLCYPRL QQGGTADNPV QTVPASSKLG GSSRAGPARQ  60
   61 VVSVAPGPAC TSLQKQLVKG RPGGDPKAES LGVRGGAAGA ARTWLDSSLP RFLQTLSTDC 120
  121 VHAQGRIKES AVGTSQLSRE RGEGAGGAPF EKLPGTLTLT RPLLAWSRSV VSATLCQATS 180
  181 VPLSYRWLCA GGKAGGPRGE LVDEVTMGPL KGSNWGEEAR ALSSRLYTGD SGVTCDCLAG 240
  241 VEGPSLSHRP LLKLGTPWVA AAPRMSTPSI HCLKPSPLHL PSGIPGSPGR QRRHTLPANE 300
  301 FRCLTPEDAA GVFEIEREAF ISVSGNCPLN LDEVRHFLTL CPELFLGWFM EGRPVAFIIG 360
  361 SLWDEERLTQ ESLTLHRPGG RTAHLHVLAV HRSFRQQGKG SVLLWRYLQH AGGQPAVRRA 420
  421 VLMCEDALVP FYQRFGFHPM GPCTIIVGSL TFTEMHCSLR GHAALRRNSD R

Type	Start	End	Confidence
Signal Peptide	1	23	0.60
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	471	0.96