YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76645654
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITGKAPTR TEKESCTGFS IVTKPPAPPP AQGTNALGTD KISGGLGKGM AGKCASLTWR  60
   61 LSPFVIKRRP GQAVGALRPP RHRRLPWAAL CPRSLGRLWP RPQGRSRVGG GEAAWLLGGP 120
  121 RRRRRGGGGG DMESGAYGAP RAGGSFDLRR FLKQPQVVVR AVCLVFALIV FSCIFGEGYS 180
  181 NTHDSQQQYC VFNRNEDACR YGSAIGVLAF LASAFFFVVD IYFPQISNAT DRKYLVIGDL 240
  241 LFSALWTFLW FVGFCFLTNQ WAATKKNDVH VEADSARAAI TFSFFSIFSW CVLAFLAYQR 300
  301 YKAGVDEFIQ NYVDPTPDPS TAYASYPGVP ADTYQQPPFT QNAESTEGYQ PPPVY

Type	Start	End	Confidence
Cytoplasmic	1	156	0.96
Transmembrane Helix	157	179	0.90
Non-Cytoplasmic	180	200	0.92
Transmembrane Helix	201	223	0.90
Cytoplasmic	224	234	0.85
Transmembrane Helix	235	257	0.86
Non-Cytoplasmic	258	277	0.83
Transmembrane Helix	278	298	0.93
Cytoplasmic	299	355	0.94