YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76645434
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	35	0.79
Transmembrane Helix	36	58	0.88
Cytoplasmic	59	82	0.89
Transmembrane Helix	83	104	0.89
Non-Cytoplasmic	105	120	0.80
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	152	0.82
Transmembrane Helix	153	173	0.89
Non-Cytoplasmic	174	192	0.79
Transmembrane Helix	193	212	0.86
Cytoplasmic	213	228	0.80
Transmembrane Helix	229	252	0.85
Non-Cytoplasmic	253	271	0.88
Transmembrane Helix	272	292	0.89
Cytoplasmic	293	318	0.90
Transmembrane Helix	319	339	0.88
Non-Cytoplasmic	340	344	0.82
Transmembrane Helix	345	366	0.93
Cytoplasmic	367	376	0.80
Transmembrane Helix	377	395	0.94
Non-Cytoplasmic	396	1090	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLAFCSWMT HQSCMFLVKA  60
   61 ASLSKRRTYA GLALHAYGKA GKMLVETSMI GLMLGTCIAF YVVIGDLGSN FFARLFGFQV 120
  121 TGTFRMLLLF AVSLCIVLPL SLQRNMMASI QSFSAMALIF YTVFMFVIVL SSFKHGLFGG 180
  181 QWLQRVSYIR WEGVFRCIPI FGMSFACQSQ VLPTYDSLDE PSVKTMSSIF ASSLNVVTTF 240
  241 YVMVGFFGYV SFTEATEGNV LMHFPSNLVT EMIRVGFMMS VAVGFPMMIL PCRQALNTLL 300
  301 FEQQQKDGTF TAGGYMPPLR FKALTLSVVF GTMVGGMMIP NVETILGLTG ATMGSLICFV 360
  361 CPTLIYKKIH KNSLSSQVVL WVGLGILVIS THTTLSVSQE TPMDLAKEAE GGRLEEAKGA 420
  421 VKVEAAQLPG QNPIVDVAED GRDKPKLPNE KDEMEQAQIK GPVNVPPRED AKEKQEAAQL 480
  481 DRPGQGVAVP LGEAHRHEPP VPHDEVIVDE GQDQEGLEKE RPSKHMDERA LGGKGQMVPP 540
  541 LLDSGRERPR QDQALEAAGG LPKDSQKVPE ENGQPAIEPV KEDLGQGDRG VHQGPQAVLS 600
  601 EGQDVPVAGA GARADGALLP GHAAGAMGKP EEKKEPGGKA PLLEEKPGPG AAPQAEPREQ 660
  661 RTEEGQGGEH TGSKLEAEIR KMVAEAGRAE MLDHAVLLQV IKEQQVQQKR LLDQQEKLLA 720
  721 VIEEQHKEIH QQRQDGQEGK HRVDVQPELG VAAPRGKEQE VHDAGMAERP PPQPVEVLPG 780
  781 APGRPAAPPQ GHSQRSVEEP EGAAGRAPAA PPGGADPQPW AAPAEPREGR QGAVPEAEGA 840
  841 GVQERLPVLE PARMPGSPEQ HGAGDVPGQS RDVFGGGAHE KKKSGKEAAA AGVDTQEADV 900
  901 LGVGAAIGAP QVKSQQASRD RAPGGRSGVA APQAQVVLHQ PEHRADPAGG QGGQQGGHME 960
  961 MRKEAPGREH VPAPWENTAG QEPEQRPDPE LGPKPAIPGD QKPDNAKPNR DLKVQAGSDL1020
 1021 RRRRRDVAPL AEAGLAPKDG VIISFNSLPE VQVNDLRSAL ETQLHQAAGG ALRVVPGRQI1080
 1081 KQLPGALEEP