YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76645259
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSESHIAVR WVVAPARCGR RAAQSARLFC SSEGRAVGRG LRYAASVRGS TVVTRLVAFL  60
   61 VATPPAGRTR PASSATPIPL GLVGAALSSV ILYTRKLAGT MGKKQNKKKV EEVLEEEEEE 120
  121 YVVEKVLDRR VVKGKVEYLL KWKGFSDEDN TWEPEENLDC PDLIAEFLQS QKTAHETDKS 180
  181 EGGKRKADSD SEDKGEESKP KKKKEESEKP RGFARGLEPE RIIGATDSSG ELMFLMKWKN 240
  241 SDEADLVPAK EANVKCPQVV ISFYEERLTW HSYPSEDDDK KDDKN

Type	Start	End	Confidence
Cytoplasmic	1	43	0.81
Transmembrane Helix	44	66	0.68
Non-Cytoplasmic	67	74	0.82
Transmembrane Helix	75	94	0.79
Cytoplasmic	95	285	0.82