YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TV23B_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQQDSNDDT EDVSLFDAEE ETTNRPKKSR IRHPVASFFH LFFRVSAIIV YLLCELFSSS  60
   61 FIACMVTIIL LLSCDFWAVK NVTGRLMVGL RWWNHIDEDG KSHWVFESRK ASPQEGKTVS 120
  121 EAESRIFWLG LVACPVLWVV FAFSALFSFR VKWLAVVIMG VVLQGANLYG YIRCKVGSRK 180
  181 NLTSMATTYL GRQFLRQTTG DTQTSSGE

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	53	0.93
Non-Cytoplasmic	54	58	0.75
Transmembrane Helix	59	79	0.91
Cytoplasmic	80	125	0.95
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	152	0.77
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	208	0.96