YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111305069, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.98
Transmembrane Helix	75	98	0.88
Non-Cytoplasmic	99	109	0.88
Transmembrane Helix	110	134	0.79
Cytoplasmic	135	142	0.88
Transmembrane Helix	143	162	0.83
Non-Cytoplasmic	163	175	0.77
Transmembrane Helix	176	197	0.71
Cytoplasmic	198	212	0.63
Transmembrane Helix	213	235	0.61
Non-Cytoplasmic	236	259	0.77
Transmembrane Helix	260	278	0.92
Cytoplasmic	279	302	0.83
Transmembrane Helix	303	325	0.82
Non-Cytoplasmic	326	345	0.78
Transmembrane Helix	346	368	0.86
Cytoplasmic	369	379	0.78
Transmembrane Helix	380	399	0.85
Non-Cytoplasmic	400	408	0.77
Transmembrane Helix	409	431	0.85
Cytoplasmic	432	443	0.70
Transmembrane Helix	444	461	0.74
Non-Cytoplasmic	462	509	0.85
Transmembrane Helix	510	529	0.92
Cytoplasmic	530	550	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTVSHKDS SRQRRPGTFN HSLDLKSGPL PPGSWDDNLP EVVGGEGDKE ALLRDISTVD  60
   61 FSKTPRSCRA ELSSILLLLF LYVLQGIPLG LAGSIPLILQ SKNVSYTDQA FFSFVFWPFS 120
  121 LKLLWAPLVD AVYFKNFGRR KSWLVPTQYI LGFFMIYLST QVDHLLGNTD GRTPDVVALT 180
  181 VTFFLFEFLA ATQDIAVDGW ALTMLSRENV GYASTCNSVG QTAGYFLGNV LFLALESADF 240
  241 CNKYLRFEPQ PRGIVTLSDF LFFWGTVFLI TTTLVALLKK ENKEVSVGKE ETQGITDTYK 300
  301 LLFAIVKMPA VLTFCLLILT AKIGFSAADA VTGLKLVEEG VPKEHLALLA VPMVPLQIIL 360
  361 PLIISRYTAG PQPLNIFYKA MPYRLLFGLE YALLVWWTPK VEHQGGFPIY YYIVVLLSYA 420
  421 LHQVTLYSMY VSIMAFNAKV SDPLIGGTYM TLLNTVSNLG GNWPSTVALW LVDPLTVKEC 480
  481 VGASNQNCRT PDAVELCKKL GGSCVTALDG YYVESVICVL IGFGWWFFLG PKLKKLQDEG 540
  541 PSSWKCKRDK