YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194675466, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMWSNFFLQ EENRRRGAAA RRRARGQPKA QMTPEREGKI KLALLLTSVG ATLAVLAVGT  60
   61 EFWVELNTYR DNGSAVCDAA HLGLWKMCTK RLWQADVPAG RDTCGPAELP GEANCTYFKF 120
  121 FTTGENAHIF QRTTKKEVNQ AAAVIAVLGL AVMALGCLCI IMVLSKGAEF LLRVGAVCFG 180
  181 LSGLLVLVSL EVFRHSVRAL MQRVSPEPPV APALTYEYSW SLGCGVGAGL ILMLGGGCFL 240
  241 LLALPPGPWS PLCPKWGQRA P

Type	Start	End	Confidence
Cytoplasmic	1	41	0.89
Transmembrane Helix	42	63	0.74
Non-Cytoplasmic	64	140	0.77
Transmembrane Helix	141	164	0.92
Cytoplasmic	165	169	0.72
Transmembrane Helix	170	193	0.88
Non-Cytoplasmic	194	221	0.71
Transmembrane Helix	222	244	0.90
Cytoplasmic	245	261	0.69