YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76640772
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVTPSPLA KGIVMDRKLR RKVHHPEDKF ALGDSAPVSN PSILALIAFI CIETIMECSP  60
   61 CEGLYFFEFV SCSAFVVTGV LLILFSLNLH MRIPQINWNL TDLVNTGLST FFFFIASIVL 120
  121 AALNHKTGAE IAAVIFGFLA TAAYAVNTFL AVQKWRVSLR QQSANDYIRA RTESRDVDSR 180
  181 PEIQRLDTFS FPHHIRLSCD

Type	Start	End	Confidence
Cytoplasmic	1	29	0.90
Transmembrane Helix	30	56	0.68
Non-Cytoplasmic	57	64	0.79
Transmembrane Helix	65	87	0.90
Cytoplasmic	88	102	0.74
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	130	0.76
Transmembrane Helix	131	151	0.96
Cytoplasmic	152	200	0.92