YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149642755, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARASGGPR ARTGFLLLLL LLGLVAPGAQ GARSRGGTEK NSYRRTVNTF SQSVSSLFGE  60
   61 DNVRAAQKFL TRLTERFVLG VDMFVETVWK VWAELLEVLG LDVSNLSQYF NPSSVASSPA 120
  121 RALLLVGVVL LAYWFLSLTL GFTFSALHVV FGRFFWVVRV ILFSMSCVYI LHKYEGEPEN 180
  181 AVLPLCFVVA IYFMTGPMGF YWRGGPSGPS VEEKLEQLEN QVRLLNIRLT RVLESLDRPN 240
  241 SK

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	121	0.98
Transmembrane Helix	122	144	0.89
Cytoplasmic	145	154	0.71
Transmembrane Helix	155	172	0.97
Non-Cytoplasmic	173	180	0.83
Transmembrane Helix	181	202	0.94
Cytoplasmic	203	242	0.96