YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61859954
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGAGRGVGE GRGRGGGGRR WRAVMAAGDG DVNLGTLGSG SESSSDGSSE SPGGAGAAAE  60
   61 GGSCLATALA LLTGGGEMLL NVALVALVLL GAYRLWVRWG RRGLGAGAGA GEESPAASLP 120
  121 RMKKRDFSLE QLRQYDGSRN PRILLAVNGK VFDVTKGSKF YGPAGPYGIF AGRDASRGLA 180
  181 TFCLDKDALK DEYDDLSDLN AVQMESVREW EMQFKEKYDY VGRLLKPGEE PSEYTDEEDT 240
  241 KDHNKQD

Type	Start	End	Confidence
Cytoplasmic	1	52	0.57
Transmembrane Helix	53	72	0.50
Non-Cytoplasmic	73	77	0.62
Transmembrane Helix	78	97	0.88
Cytoplasmic	98	247	0.92