YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76637598
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFRRLRLF RLRDSPANGL GARTGSGNGW RLTAPPRRPS WKPGRRCRAG LSGSARLPLP  60
   61 GPSETPARQP PASSFPRPSG DRVRPQWTAR MSEGDSVGDS VHGKPSVVYR FFTRLGQIYQ 120
  121 SWLDKSTPHT AVRWVVTLGL SFIYMIRVYL LQGWYIVTYA LGIYHLNLFI AFLSPKVDPS 180
  181 LMEDSDDGPS LPTKQNEEFR PFIRRLPEFK FWHAATKGIL VAMVCTFFEA FNVPVFWPIL 240
  241 VMYFIMLFCI TMKRQIKHMI KYRYIPFTHG KRTYKGKEDA GKTFAS

Type	Start	End	Confidence
Cytoplasmic	1	129	0.95
Transmembrane Helix	130	148	0.87
Non-Cytoplasmic	149	154	0.63
Transmembrane Helix	155	173	0.88
Cytoplasmic	174	208	0.88
Transmembrane Helix	209	230	0.82
Non-Cytoplasmic	231	234	0.75
Transmembrane Helix	235	253	0.92
Cytoplasmic	254	286	0.96