YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|154152031, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	215	0.90
Transmembrane Helix	216	239	0.89
Non-Cytoplasmic	240	263	0.84
Transmembrane Helix	264	283	0.86
Cytoplasmic	284	301	0.90
Transmembrane Helix	302	323	0.92
Non-Cytoplasmic	324	330	0.84
Transmembrane Helix	331	352	0.92
Cytoplasmic	353	391	0.96
Transmembrane Helix	392	412	0.69
Non-Cytoplasmic	413	419	0.63
Transmembrane Helix	420	442	0.69
Cytoplasmic	443	456	0.78
Transmembrane Helix	457	476	0.88
Non-Cytoplasmic	477	489	0.76
Transmembrane Helix	490	510	0.92
Cytoplasmic	511	530	0.87
Transmembrane Helix	531	549	0.72
Non-Cytoplasmic	550	560	0.67
Transmembrane Helix	561	585	0.73
Cytoplasmic	586	621	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSNSQLYNVK YKDGTELELK ESDIKPLTSF  60
   61 RQRKSGSTSS SPSRRRGSRS RSRSRSPGRL PKGSRRSASA SYQADLKEAR KEARKDMLEV 120
  121 KLTPLVLKPF GNSINRYNGE PELIERNDMP HKHTQEKFHL SQESSYIPTQ YSLRARREEI 180
  181 KLKEVESKEE IVVTKRPALL RTSEVTATQS KDLEFGGVPG VFLIMLGLPA FLFLLLLMCK 240
  241 QKEPSLLNFP PPLPALGDLW ETRVFGAYLL WFLLQALFHL LPIGKVVEGT PLTDGRRLKY 300
  301 RLNGFYAFIL TSALVGACFF WNVELYYVYR HFLQFALAAI LFATGLSVYL YARALKAPQD 360
  361 ELSPASSGNA IYDFFIGREL NPRIGTFDLK YFCELRPGLI GWVVINLVML LAEMKEQNRA 420
  421 VPSLAMILVN SFQLLYVVDA LWNEEALLTT MDIIHDGFGF MLAFGDLVWV PFIYSFQAFY 480
  481 LVSHPNELSW PMASLIIALK LCGFVIFRCA NSQKNAFRKN PADPRLAHLK TIHTSTGKNL 540
  541 LVSGWWGFVR HPNYLGDLIM ALAWSLPCGF NHILPYFYVI YFTILLVHRE ARDEHHCRKK 600
  601 YGLAWEKYCQ RVPYRIVPYI Y