YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76636955
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYSGKTCR LLFMLVLTVA FFVAELVSGY LGNSIALLSD SFNMLSDLIS LCVGLSAGYI  60
   61 ARRPRGGLGA TYGYARAEVV GALSNAVFLT ALCFTIFVEA VLRLARPERI DDPELVLIVG 120
  121 ALGLAVNVVG LLIFQDCAAW FACCGRRRRL QQQQHPQPAA GVGSRGAFGD PQGAECGWHA 180
  181 GALPTPGRDS AVTLRASSVD RKDEKGATVF SNVAGDSLNT QNEPEETMKK EKKSEALNIR 240
  241 GVLLHVMGDA LGSVVVVITA IIFYVLPLKR EDPCNWQCYI DPSLTVVMVI IILSSAFPLI 300
  301 KETAAILLQM VPKGVNMEEL MSKLSAVPGI SSLHEVHIWE LISGKIIATL HIKCQQDGGD 360
  361 QDANRKIREI FHNAGIHSVT IQFEKADLKE PLEQKDLQLL CSSPCIAKSC AKQLCCPPGA 420
  421 LPLAHVNGCA EHNGCPPLDM SQGDVLRRRQ TTEVAIEVSL EGCLTDHGQA LGKPQEDSRY 480
  481 VNSTHF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	41	0.80
Transmembrane Helix	42	61	0.92
Cytoplasmic	62	78	0.88
Transmembrane Helix	79	101	0.88
Non-Cytoplasmic	102	116	0.87
Transmembrane Helix	117	140	0.89
Cytoplasmic	141	241	0.96
Transmembrane Helix	242	265	0.91
Non-Cytoplasmic	266	278	0.89
Transmembrane Helix	279	300	0.82
Cytoplasmic	301	486	0.88