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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76636501
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPREKKTSF TGNHCGSLFL LFIVPPRKGG QCLGEPHGTE SSGILSYCSS IPARVPENSA  60
   61 YSCDELITLR KVSPSCTWGD LERQANWPWS RCAASPRWIP VASAGSPASF LGQPIPSACG 120
  121 RKPCHRGETW AVCEPKVRQY LLDCLCLEEG DGTMTSSTSP RSCLRDLLGL ASSPECACGR 180
  181 SHFTCAVSAL GECTCIPAQW QCDGDNDCGD HSDEDGCKLP TCSPLDFHCD NGKCIRRSWV 240
  241 CDGDNDCEDD SDEQDCPPRE CEEDEFPCQN GYCIRSLWHC DGDNDCGDNS DEQCDMRKCS 300
  301 DKEFRCSDGS CIAEHWYCDG DTDCKDGSDE ESCPSAVPAP PCNLEEFQCA YGRCILDIYH 360
  361 CDGDDDCGDW SDESDCSSHQ PCRSGEFMCD SGLCINAGWR CDGDADCDDQ SDERNCTTSV 420
  421 CTAEQFRCRS GRCVRLSWRC DGEDDCADNS DEENCENTGS PQCASDQFLC WNGRCIGQRK 480
  481 LCNGVNDCGD NSDESPQQNC RPRTGEENCS VNNGGCAQKC QMVRGAIQCT CHTGYRLTED 540
  541 GRTCQDVNEC AEEGYCSQGC TNSEGAFQCW CEAGYELRPD RRSCKALGPE PVLLFANRID 600
  601 IRQVLPHRSE YTLLLNNLEN AIALDFHHRR ELVFWSDVTL DRILRANLNG SNVEEVVSTG 660
  661 LESPGGLAVD WVHDKLYWTD SGTSRIEVAN LDGAHRKVLL WQNLEKPRAI ALHPMEGTIY 720
  721 WTDWGNTPRI EASSMDGSGR RIIADTHLFW PNGLTIDYAG RRMYWVDAKH HVIERANLDG 780
  781 SHRKAVISQG LPHPFAITVF EDSLYWTDWH TKSINSANKF TGKNQEIIRN KLHFPMDIHT 840
  841 LHPQRQPAGK NRCGDNNGGC THLCLPSGQN YTCACPTGFR KISSHACAQS LDKFLLFARR 900
  901 MDIRRISFDT EDLSDDVIPL ADVRSAVALD WDSRDDHVYW TDVSTDTISR AKWDGTGQEV 960
  961 VVDTSLESPA GLAIDWATNK LYWTDAGTDR IEVANTDGSM RTVLLWENLD RPRDIVVEPM1020
 1021 GGYMYWTDWG ASPKIERAGM DASGRQVIIS SNLTWPNGLA IDYGSQRLYW ADAGMKTIEF1080
 1081 AGLDGSKRKV LIGSQLPHPF GLTLYGERIY WTDWQTKSIQ SADRLTGLDR ETLQENLENL1140
 1141 MDIHVFHRRR PPVSTPCATE NGGCSHLCLR SPNPSGFSCT CPTGINVMPD GKTCSPGMNS1200
 1201 FLIFARRIDI RMVSLDIPYF ADVVVPINIT MKNTIAIGVD PQEGRVYWSD STLHRISRAR1260
 1261 LDGSQHEDLI TTGLQTTDGL AVDAIGRKVY WTDTGTNRIE VGNLDGSMRK VLVWQNLDSP1320
 1321 RAIVLYHEMG FMYWTDWGEH AKLERSGMDG SDRAVLINSN LGWPNGLTVD KASSQLLWAD1380
 1381 AHTERIEAAD LNGANRHTLV SPVQHPYGLT LLDAYIYWTD WQTRSIHRAD KGTGSNVILV1440
 1441 RSNLPGLMDI QAVDRSQPLG VNKCGPRNGG CSHLCLPRPS GFSCACPTGI QLKGDGKTCD1500
 1501 PAPETYLLFS SRGSIRRISL DTSDHTDVHV PVPELNNVIS LDYDSVDGKV YYTDVFLDVI1560
 1561 RRADLNGSNM ETVIGRGLKT TDGLAVDWVA RNLYWTDTGR NTIEASRLDG SCRKVLINNS1620
 1621 LDEPRAIAVF PRKGYLFWTD WGHIAKIERA NLDGSERKVL INTDLGWPNG LTLDYDTRRI1680
 1681 YWVDAHLDRI ESADLSGKLR QVLVSHVSHP FALTQQDRWI YWTDWQTKSI QRVDKYSGRN1740
 1741 KETVLANVEG LMDIIVVSPQ RQTGTNACGV NNGGCTHLCF ARTSDFVCAC PDEPDGRPCS1800
 1801 LVPGLVPPAP RATSMSDRSP VLPNTLPTTL RSSTTRTRTS LEEVEGRCSE KDARLGLCAH1860
 1861 SNEAVPAAPG EGLHASYIIG GLLSVLLILV VIAALMLYRH KKSKLTDPGM GNLTYSNPSY1920
 1921 RTSTQEVKIE ATPKPAMYNQ LCYKKEGGPD HNYTKEKVKI VEGICLLSGD DAEWDDLKQL1980
 1981 RSSRGGLLRD HVCMKTDTVS IQASSGSLDD METEQLLQEE QSECSSVHTA ATPERRGSLP2040
 2041 DTGWRHERKL SSESQV

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