YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPAL_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRRFGWSR AALLQLILGV NLMVMPRTQA RTLRFVTLLY RHGDRSPVKA YPKDPHQEDK  60
   61 WPQGFGQLTK EGMLQHWELG QALRQRYHGF LNTSYHRQEV YVRSTDFDRT LMSAEANLAG 120
  121 LFPPDGIQRF NPNISWQPIP VHTVPVAEDR LLKFPLGPCP RFEQLQNETR RMPEYQNESV 180
  181 QNAQFLDMVA NETGLTDLSL ETVWNVYDTL FCEQTHGLPL PPWASPQTMQ RLSRLKDFSF 240
  241 RFLFGIYKQA EKARLQGGVL LAQIRKNLTL MATTSQLPKL LVYSAHDTTL VALHMALGVY 300
  301 NGEQAPYASC HMFELYQEDS GNFSVEMYFR NESHRAPWPL TLPGCSHRCP LQDFLRLTEP 360
  361 VVPKDWLQEC QLAGGPADTE VIVALAVCGS ILFLLIVLLL TVLFRVQAQP PGYRHVPDGE 420
  421 DHA

Type	Start	End	Confidence
Signal Peptide	1	30	0.88
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	380	0.98
Transmembrane Helix	381	404	0.92
Cytoplasmic	405	423	0.94