YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76636256
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.62
Transmembrane Helix	62	84	0.85
Non-Cytoplasmic	85	86	0.38
Transmembrane Helix	87	102	0.30
Cytoplasmic	103	104	0.45
Transmembrane Helix	105	127	0.79
Non-Cytoplasmic	128	136	0.65
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	255	0.76
Transmembrane Helix	256	277	0.86
Non-Cytoplasmic	278	296	0.74
Transmembrane Helix	297	320	0.88
Cytoplasmic	321	329	0.78
Transmembrane Helix	330	354	0.88
Non-Cytoplasmic	355	367	0.67
Transmembrane Helix	368	389	0.86
Cytoplasmic	390	404	0.73
Transmembrane Helix	405	430	0.68
Non-Cytoplasmic	431	448	0.62
Transmembrane Helix	449	474	0.77
Cytoplasmic	475	591	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEAKSQRQ LIKVLKDEEE FSSANNMPKQ VEVRMHDSHL SAEEPKPRHL GLRLCDKLGK  60
   61 NLLLTLTVFG VILGAVCGGL LRLASPIHPD VVMLIAFPGD ILMRMLKMLI LPLIISSLIT 120
  121 GLSGLDAKAS GRLGTRAMVY YMSTTIIAAV LGVILVLAIH PGNPKLKKQL GPGKKNDEVS 180
  181 SLDAFLDLIR NLFPENLVQA CFQQIQTVTK KVLVAPPSDE DGNATNAVLS LLNETVTEVP 240
  241 EETQVVIKKG LEFKDGMNVL GLIGFFIAFG IAMGKMGEQA KLMVEFFNIL NEIVMKLVIM 300
  301 IMWYSPLGIA CLICGKIIAI KDLEVVARQL GMYMITVIVG LIIHGGIFLP LIYFLVTRKN 360
  361 PFSFFAGIFQ AWITALGTAS SAGTLPVTFR CLEENLGIDK RVTRFVLPVG ATINMDGTAL 420
  421 YEAVAAIFIA QMNGVVLDGG QIVTVSLTAT LASVGAASIP SAGLVTMLLI LTAVGLPTED 480
  481 ISLLVAVDWL LDRMRTSVNV VGDSFGAGIV YHLSKSELDT IDSQHRVHED IEMTKTQSIY 540
  541 DDLKNHRESN SNQCVYAAHN SVIVDECKVT LAANGKSADC SVEEEPWKHE K