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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76636224
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRKKVDNRI RILIENGVAE RQRSLFVVVG DRGKDQVVIL HHMLSKATVK ARPSVLWCYK  60
   61 KELGFSSHRK KRMRQLQKKI KNGTLNIKQD DPFELFVAAT NIRYCYYSET HKILGNTFGM 120
  121 CVLQDFEALT PNLLARTVET VEGGGLVVVL LRTMNSLKQL YTMTMDVHSR YRTEAHQDVV 180
  181 GRFNERFILS LASCKKCLVI DDQLNILPIS SHAASIEALP PQTPDESLGP SDLELKELKE 240
  241 SLQDTQPVGV LVDCCKTLDQ AKAVLKFIEG ISEKTLRSTV ALTAARGRGK SAALGLAIAG 300
  301 AVAFGYSNIF VTSPSPDNLH TLFEFVFKGF DALQYQEHLD YEIIQSLNPE FNKAVIRVNV 360
  361 FREHRQTIQY IHPADAVKLG QAELVVIDEA AAIPLPLVKS LLGPYLVFMA STINGYEGTG 420
  421 RSLSLKLIQQ LRQQSAQSQV STTAENKTTA TARLASVRTL HEVSLQESIR YAPGDAVEKW 480
  481 LNDLLCLDCL NITRIVSGCP LPEACELYYV NRDTLFCYHK ASEVFLQRLM ALYVASHYKN 540
  541 SPNDLQMLSD APAHHLFCLL PPVPPTQNAL PEVLAVIQVC LEGEISRQSI LNSLSRGKKA 600
  601 SGDLIPWTVS EQFQDPDFGG LSGGRVVRIA VHPDYQGMGY GSRALQLLQM YYEGRFPCLE 660
  661 EKVLETSQEI HTVSSEVSAV SLLEEVVTPR KDLPPLLLKL NERPAEHLDY LGVSYGLTPR 720
  721 LLKFWKRAGF VPVYLRQTPN DLTGEHSCIM LKTLMDEEEA DQGAWLSAFW KDFRRRFLSL 780
  781 LSYQFSTFSP PLALNILQNR NIGKPVQPGE LAGRLEGLGC AEPLRREELE ALFLPYDLKR 840
  841 LEMYSRNMVD YHLIMDMIPA ISRLYFLNQL GDLALSAAQS ALLLGIGLQH KSVDQLEKEI 900
  901 ELPSGQLMGL FNRIIRKVVK LFNEVQEKAI EEQMVAVKDV VMEPTMKTLS DDLDEAAKEF 960
  961 QEKHRKEVGK LKDMDLSQYV IRGDDEEWNE VLNKAGQNAS IVSLKSDKKR KPEAKQEPKQ1020
 1021 NKKLKKNRDM KNKKDMKLKR KK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle