YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76636064
Protein type: Transmembrane
Type Confidence: 0.51
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTALAKPQM HGLLAKRLQF HIVGAFMVSL GFATFCKFSV AEKRKKAYAD FYRNYDSMKD  60
   61 FEEMRKAGIF QTLLEQGNKL RNAMVISAMK SSPDTSMLLE EVHPSMKEDL LRTSSQIKAL 120
  121 SRNQVKDHVE DHLLPPTEKQ ENWKHDAKAD TRAIQLLLGS AELSQGRCWD GLGSPPDSPS 180
  181 PGSDVYCSSE PNDPQYDQSL LENLFYTAPK SDTSVSDIFS EDDDVPSKTM SQSKALARSP 240
  241 KVLKSNDHKS KKEMGKKNRN IVEQQMLSET PEDAQGMTLS VDKLALLGRT HSVRIIIETM 300
  301 GVPPDSPQDT SGKKTFPGRP PKLTSKKRTF FVEYHFPVGF SKNGLTKTTL ITEVIRLASS 360
  361 KIIDGVVKFQ QRSVFPVQFG GPMIRHWWNS NLTFQIYTKK TPQKKPEVIG SASLPLRTVI 420
  421 QSELLSFSDQ LPVQQENGQT PLGPIKVTVE LVLDNKDFTG VNTELSSNTQ RTPLSGLTNP 480
  481 DKTLPETVQD VTCTKNPQTL NQIHEETVKK MQNLMLPIPK SPSPFIPNSS TFMAAPASHD 540
  541 LVNEMNGSTE ESALLLHVLL MVPDGKDFVT GESEKQPSSN IYLNCKLFST EEVTRSVIAW 600
  601 GTTKPVFNFS QVIPVSLSSK CLERLKNNVM IIETWNKVRS PGQDKLLGLV KLPLHQFYMS 660
  661 FKDPKVSRLL LDARYPVVAV DSYMPVIDVF SGHQNGSLRV FLAMGSADQI IALQRLKNEE 720
  721 GTLTPFNPRP AHFLDQPSVA SVAMAGDHGN GLMEHHFELF VDKVKGLAPL QATVWGEADC 780
  781 YVQYYFPVQD SQSSVLKGPE FLENGITLKP FRSAATLCVP DPVFNSRHHH SLLLPAEVPV 840
  841 QRLLLSTFSA HGLVPGGGVQ FEIWCRYYYP NVRDQMVAKG TLPLSRICAL VTMQHREDGG 900
  901 IQTFNLPLTP RLENRKELRN QSSGLLDVGL RYRRTPRTAE GVLAARTVSI SVQIIRACGL 960
  961 QAAAKALAEQ EPALQFSATV GVNAFVTTHL SFLPKGEQRQ TRPVACSFCP EFSHHSEFSC1020
 1021 NLVTQHCSGE ACFLAELLEF AEVTFAVYHE DTKSASDITS IHSFKDYLLG VVKIPTKDLL1080
 1081 MKRSGITGWY PIVFPEEGAL PHGLELMQKI VGGLELSVSF THPGDRERVL EAAELLGWSF1140
 1141 ESHLKDFVKM DEEEPATVTI STPRLWLPIH CVLLAGHNHI HKNTYCYLRY KLYDHEGFWT1200
 1201 PLKKPKESTN KKQVMVTFKA SKRAEVTRNP SLLWYFREER LEIQVWRAYG NESVERPHQT1260
 1261 DSWIGSAYVD LTRLGERSAR TLTVSGVYPL FGRNASNLSG AALRVHVVLS SLSSHPGPTH1320
 1321 ELDSMDCSSH SESEQVPRGI DEIQLSPPHG HQKSPASTQV PCNNTTAEVC PAQEGPPESD1380
 1381 GTFTVSILVE RAMHLSLKGS PLTQRKVSIP SCCVSFVTAD EPSPIYTQVV ENTDSPIWNF1440
 1441 QQQSRLSKEL LLDPQQTLVF KVWHKGDEER VIGFASVDLS PLLSGFQFVC GWYNITDFSG1500
 1501 ECQGQIKVAI SPLESLVHFK EERQARREVE NPGSLIPVYT AFSFPASAVY AAFPGCTVGQ1560
 1561 PPELPAHPSS KEADFSSPGT SGTTRSQASR HEEHVQNIRR FHESLQQAEA ILPNDDRLTT1620
 1621 SPLSSRTSIL TSLRRNLSEL DQMQRYFNQK LTKPLLPLSP QTHTAILQCQ ESQTDRLRPA1680
 1681 ASSLDPESQC ILEKSNNLVL QVSSLITDLQ TLTRNSQGSV SSHQARSRSR EVTALPDAQD1740
 1741 RGTMQERSTS PDLPLARAPD EGRSSPPPSA LKETSSGRGK VHEALEHTVP ITKMQSTEDT1800
 1801 EAGPAFSDED YEEDIIEPRT LNEITTVTDK TSPWSSFTSD ASGGMSPQPD EAQREAFSCP1860
 1861 SESFPREELR VRNSFLSSPE RTVNAYLHRQ GSPSQSTASC EGVASKARVG EPASADPQLT1920
 1921 SHMTLSGAQQ SDTCVGWRSP KADQDQGPKP QSQAKKEVAS DELSDSADSS EKFPLQPASQ1980
 1981 NRRENHKEPP ITCPDIRQKQ TTSGSEVSTR QSLLYPLPIV VPNFFLPPQE LAASLRMLSI2040
 2041 SAALPPPATT DQDKSQATRG SLSQRPCRPR PSSLPPTLPE EETRRIARIF SSQFSQKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle