YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGAP2_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQVPLPLDR DGTLVRLRFT LVALVTVCCP LVAFLFCVLW SLLFHFKETT ATHCGVPNYL  60
   61 PSVSSAIGGE VPQRYVWRFC IGLHSAPRFL VAFAYWNHYL SCTSPCAGYR PLCRLNFGLN 120
  121 VVENVALLVL TYVSSSEDFT IHENAFIVFI ASSLSHMLLT CILWRLTKKH TVSQEDRKSY 180
  181 NWKQRLFIIN FVSFFTALAV YFRHNMYCEA GVYTIFAILE YTVVLTNMAF HMTAWWDFGN 240
  241 KELLITSQPE EKRF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.82
Transmembrane Helix	20	43	0.91
Non-Cytoplasmic	44	74	0.81
Transmembrane Helix	75	99	0.62
Cytoplasmic	100	114	0.61
Transmembrane Helix	115	134	0.69
Non-Cytoplasmic	135	144	0.85
Transmembrane Helix	145	166	0.94
Cytoplasmic	167	185	0.93
Transmembrane Helix	186	204	0.94
Non-Cytoplasmic	205	211	0.81
Transmembrane Helix	212	235	0.85
Cytoplasmic	236	254	0.94