YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76634565
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLQPEAPI PTRPSRSGPS NLASEEPPRR GGTPPPLGGT RSEARCRCPK AGKARPSRAL  60
   61 ASPRPLDPVA SPRAAPGPGL PGSRLSCQSD ADFPHGQQTN QRAGVLFGPS ALPGSASLRK 120
  121 PTSSGSLWTA GSAWKSQASQ RCFRNSYSER GVSQTPKASD TLLGEKLVSN KNMLKDVAIS 180
  181 SQDVVTENRL KETFREGMAS GDENAERTNR VLRISQLDAL ELNKALEQLV WSQFTQCFHG 240
  241 FKPGLLARFE PEVKAFLWLF LWRFTIYSKN ATVGQSVLNI QYQNDLSPNL SYQPPSRNQK 300
  301 LWYAVCTIGG KWLEERCYDL FRNRHIASFR KAKLCMNLVV GLLKLGGLIN FLIFLQRGKF 360
  361 ATLTERLLGI HSVFHKPQSV REVGFEYMNR ELLWHGFAEF LIFLLPLINV QKLRAKLSSW 420
  421 CVPLTGAPGS NSTLATSGRQ CSLCGEWPTM PHTIGCEHVF CYYCVKSSFL FDMSFTCPKC 480
  481 GTEVHSLQPL KSGIEMAEVS VP

Type	Start	End	Confidence
Cytoplasmic	1	333	0.78
Transmembrane Helix	334	354	0.81
Non-Cytoplasmic	355	391	0.95
Transmembrane Helix	392	410	0.76
Cytoplasmic	411	502	0.77