YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76634248
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKNDKKKD AGKSAKKDKY PVSKSGGKAK MKKWSKGRVR DKLNNLVLFN KATYYKLCKE  60
   61 VPNYKLIPPA VISERLEIHG SLARAALQEL LTSALTFPVS AEGALPQLGV WLTASPRPRF 120
  121 PSGAGCPAAL SVPLPCCPAT VILPVLFACG SWHLVKTPLL SCRTCALKS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.67
Transmembrane Helix	90	105	0.47
Non-Cytoplasmic	106	128	0.66
Transmembrane Helix	129	154	0.59
Cytoplasmic	155	169	0.51