YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76633964
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETSPKAEA AKLLPFLALG ERADLQAAAA QHVLALTGSG PGRTLLAGQT ALLRALVELA  60
   61 VAPPPAPARD AARALVNLAA DPGLHKPLLA AEPRLPVRLL GCALDPQWPW AEEAAAVLAN 120
  121 LSREPVPCAA LIEALAAAEP GESGLERLVR ALCTPGYNAR APLHYLGPVL SNLSQRPATR 180
  181 AFLLDRNRCV VQRLLPLTQY PDSSVRRGGV VGTLRNCCFE HRHHEWLLGP EVDVLPFLLL 240
  241 PLAGPEDFSE EEMERLPVDL QYLPPDKQRE PDADIRKMLI ETIMLLTATA PGRKQVRDQG 300
  301 AYLILRELHS WEPEPDVRVT CEKLIQVLIG DEPERGLENL LEVQVPEEVE RQLQQQDHQE 360
  361 REQCEREQQE LELGPEPQAE GAVPT

Type	Start	End	Confidence
Signal Peptide	1	29	0.63
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	385	0.99