YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYS1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQFRSYVW DPLLILSQIV LMQTVYYGSL GLWLALVDGL VHSSPSLDQV FDAEILGFST  60
   61 PPGRLSTMSF VLNALTCALG LLYFIRRGKQ CLDFTVTVHF FHLLGCWLYS SRFPSALTWW 120
  121 LVQAVCIALM AVIGEYLCMR SELKEIPLNS APKSSV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.84
Transmembrane Helix	14	36	0.83
Non-Cytoplasmic	37	64	0.92
Transmembrane Helix	65	85	0.94
Cytoplasmic	86	91	0.88
Transmembrane Helix	92	111	0.91
Non-Cytoplasmic	112	118	0.75
Transmembrane Helix	119	139	0.94
Cytoplasmic	140	156	0.97