YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76633614
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKTVAERV RGGGRWPTRS GMEHLERCAW VLRGTLVRSA VRKYLPWALA ASMLAGSLLK  60
   61 ELSPLPESYL SNKRNVLNVY FVKVAWAWTF CLLLPFIALT NYHLTGKAGL VLRRLSTLLV 120
  121 GTAIWYVCTA IFSNIEHYTG SCYQSPALEG ERKEHQSKQQ CHGEGGFWHG FDISGHSFLL 180
  181 TFCALMIVEE MAVLHEVKTD RNHCLHAAIT TLVVALGFLT FIWVWMFLCT AVYFHNLSQK 240
  241 VFGTLFGLLG WYGTYGCWYL KSFSPGLPPQ SSSLNLKQDT YKK

Type	Start	End	Confidence
Cytoplasmic	1	42	0.95
Transmembrane Helix	43	62	0.87
Non-Cytoplasmic	63	83	0.91
Transmembrane Helix	84	104	0.93
Cytoplasmic	105	114	0.79
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	172	0.95
Transmembrane Helix	173	194	0.87
Cytoplasmic	195	203	0.89
Transmembrane Helix	204	227	0.87
Non-Cytoplasmic	228	240	0.74
Transmembrane Helix	241	260	0.87
Cytoplasmic	261	283	0.91