YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76633457
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDTPSLFC LEAFVFTIPP GWNLVSWLFT WLAPLLSFRF ALHVTSSERP FLTNLNSYTP  60
   61 VILSTTTQHG AFKARATIFY PSDSSILTSF FSVTPFLDNQ LPADLDHLEP PRSLLLHPPP 120
  121 LSATTMMDVS ELGESARYLR QGYHEQMKVH TVLWDGKKRV WVPDEQDAYV EAEIKSEATG 180
  181 GRVNVETKDQ KVLTVREAEL QPMNPPRFDL LEDMAMMTHL NEASVLHNLR QRYARWMIYT 240
  241 YSGLFCVTIN PYKWLPVYTA SVVAAYKGKR RSEAPPHIYA VADNAYNDML RNRENQSMLI 300
  301 TGESGAGKTV NTKRVIQYFA IVAALGDGPG KKAGTLEDQI IEANPAMEAF GNAKTLRNDN 360
  361 SSRFGKFIRI HFGPSGKLAS ADIDSYLLEK SRVIFQLPGE RGYHVYYQIL SGKKPELQDM 420
  421 LLLSMNPYDY HFCSQGVITV DNMDDGEELM ATDHAMDILG FSVEEKCACY KIVGALLHFG 480
  481 NMKFKQKQRE EQAEADGTES ADKAAYLMGV SSGDLLKGLL HPRVRVGNEY VTKGQSVEQV 540
  541 VFAVGALAKA TYDRLFRWLV SRINQTLDTK LPRQFFIGVL DIAGFEIFEF NSFEQLCINF 600
  601 TNEKLQQFFN QHMFVLEQEE YKREGIDWVF IDFGLDLQPC IDLIEKPLGI LSILEEECMF 660
  661 PKASDASFRA KLYDNHAGKS PNFQQPRPDK KRKYQAHFEV VHYAGVVPYS IVGWLEKNKD 720
  721 PLNETVVPIF QKSQNKLLAT LYENYAGSCS SEYQVPPKSG VKEKRKKAAS FQTVSQLHKE 780
  781 NLNKLMTNLR ATQPHFVRCI VPNENKTPGV MDAFLVLHQL RCNGVLEGIR ICRQGFPNRL 840
  841 LYTDFRQRYR ILNPSAIPDD TFMDSRKATE KLLGSLDIDH TQYQFGHTKV FFKAGLLGVL 900
  901 EELRDQRLAK GVSGKESACQ WTTRPFRVCE LQPWRQTCMP WASPSTSDAL FTIQWNIRAF 960
  961 NAVKNWSWMK LFFKMKPLLR SAQAEEELAA LRAELRGLRG ALATAEAKRQ ELEETHVSVT1020
 1021 QEKNDLALQL QAVRRGRAGF LSATWCPDPR ASSGNPRLLR GNSTGRRTVP HSPRPPPLPP1080
 1081 AQPRPTWSRT LGCPDFAPFP CPPPGAGPSA VLTLRHSRVP LQEQENLADA EERCHLLIKS1140
 1141 KVQLEAKVKE LSERLEDEEE VNADLAARRR KLEDECTELK KDIDDLELTL AKAEKEKQAT1200
 1201 ENKVKNLTEE MAALDESVVR LTKEKKALQE AHQQALGDLQ AEEDRVSALA KAKVRLEQQV1260
 1261 EDLECSLEQE KKLRMDTERA KRKLEGDLKL TQESVADAAQ DKQQLEEKLK KKDSELSQLN1320
 1321 LRVEDEQLLG AQLQKKIKEL QARAEELEEE LEAERAARAR VEKQRAEAAR ELEELSERLE1380
 1381 EAGGASAGQR EGCRKREAEL GRLRRELEEA ALRHEATVAA LRRKQADSAA ELGEQVDSLQ1440
 1441 RVRQKLEKEK SELRMEVDDL SANVETLARG KASAEKLCRA YEDQLSEAKI KVEELQRQLA1500
 1501 DASTQRGRLQ TESGELSRLL EEKESLISQL SRGKALATQS LEELRRQLEE ESKAKSALAH1560
 1561 AVQALRHDCD LLREQHEEEA EAQAELQRLL SKANAEVAQW RSKYEADAIQ RTEELEEAKK1620
 1621 KLALRLQEAE EGVEAAHAKC SSLEKAKLRL QTESEDVTLE LERATSAAAA LDKKQRHLER1680
 1681 ALEERRRQEE EMQRELEAAQ REARSLGTEL FRLRHSHEEA LEALETLRRE NKNLQEEISD1740
 1741 LTDQVGLSGK SVQELEKAKK ALEGEKSELQ AALEEAEGAL ELEETKTLRI QLELSQVKAE1800
 1801 VDRKLAEKDE ECTNLRRNHQ RAVESLQASL DAETRARNEA LRLKKKMEGD LNDLELQLGH1860
 1861 ATRQATEAQA ATRLLQAQLK EEQAGRDEEQ RLAAELREQA QALERRAALL AAELEELRAA1920
 1921 LEQGERSRRL AEQELLEATE RLNLLHSQNT GLLNQKKKLE VDLAQLSGEV EEAAQERREA1980
 1981 EEKAKKAITD AAMMAEELKK EQDTSTHLER MKKTLEQTVR ELQARLEEAE QAAPPGREEA2040
 2041 GAEAGGQGAG AGGRAGRGAE EARRGPQRGA EARTPGQGAR VPG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle