YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76633122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLLALLSP AGRVGARVRC RATWLLGAAA PCVPPPVFLP LLGPGPDAQL LRAARGNYQG  60
   61 RQDPSKITVT TGSNIKGTEE EKLSKSQQLK KIFQEYGAVA VSLHIGISLI SLGMFYMVIS 120
  121 SGVDMSAVLL KLGFKESLVQ SKMAAGTSTF VVAYAIHKLF APVRISITLV SVPLIVRYFR 180
  181 KVGIFKPPAA KP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	42	0.63
Non-Cytoplasmic	43	99	0.75
Transmembrane Helix	100	123	0.79
Cytoplasmic	124	137	0.62
Transmembrane Helix	138	157	0.60
Non-Cytoplasmic	158	159	0.51
Transmembrane Helix	160	179	0.58
Cytoplasmic	180	192	0.70