YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76630766
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGQCSLP ASWRPVTLTH VEYPAGDLSG HVLAYLSLSP VFVIVGFVTL IIFKRELHTI  60
   61 SFLGGLALNE GVNWLIKHVI QEPRPCGGPH TAVGTKYGMP SSHSQFMWFF SIYSFLFLYL 120
  121 RMHQTNNARF LDLLWRHVLS LGLLTVAFLV SYSRVYLLYH TWGQVLYGAV AGGLMAVAWF 180
  181 VFTQEVLTPL FPRIAAWPIS EFFLIRDTSL IPNVLWFEYT VTRAEARNRQ RKLGTKLQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.67
Transmembrane Helix	32	53	0.93
Cytoplasmic	54	59	0.61
Transmembrane Helix	60	78	0.44
Non-Cytoplasmic	79	103	0.68
Transmembrane Helix	104	123	0.88
Cytoplasmic	124	132	0.72
Transmembrane Helix	133	156	0.86
Non-Cytoplasmic	157	162	0.61
Transmembrane Helix	163	183	0.91
Cytoplasmic	184	238	0.70