YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76629452
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.86
Transmembrane Helix	23	45	0.88
Non-Cytoplasmic	46	61	0.84
Transmembrane Helix	62	83	0.81
Cytoplasmic	84	104	0.77
Transmembrane Helix	105	124	0.89
Non-Cytoplasmic	125	130	0.68
Transmembrane Helix	131	150	0.68
Cytoplasmic	151	161	0.55
Transmembrane Helix	162	188	0.83
Non-Cytoplasmic	189	201	0.54
Transmembrane Helix	202	227	0.81
Cytoplasmic	228	266	0.62
Transmembrane Helix	267	286	0.55
Non-Cytoplasmic	287	312	0.78
Transmembrane Helix	313	334	0.91
Cytoplasmic	335	353	0.71
Transmembrane Helix	354	375	0.61
Non-Cytoplasmic	376	403	0.46
Transmembrane Helix	404	430	0.83
Cytoplasmic	431	431	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTPLIT TAIAATAASG PLVDYLWMLI LGFIIAFVLA FSVGANDVAN SFGTAVGSGV  60
   61 VTLKQACILA SIFETVGSVL LGAKVSETIR KGLIDVEMYN STQKLLMAGS VSAMFGSAVW 120
  121 QLVASFLKLP ISGTHCIVGA TIGFSLVAKG QEGVKWSELI KIVLSWFVSP LLSGIMSGIL 180
  181 FFLVRAFILR KADPVPNGLR ALPVFYACTV GINLFSIMYT GAPLLGFDKL PLWGTILISV 240
  241 GCADEEKNRT TSSLEEWCDQ DKPEVSLLFQ FLQILTACFG SFAHGGNDVS NAIGPLVALY 300
  301 LVYDTGDVSS KVATPIWLLL YGGVGICIGL WVWGRRVIQT MGKDLTPITP SSGFSIELAS 360
  361 ALTVVIASNI GLPISTTHCK VGSVVSVGWL RSKKAVDWRL FRNIFMAWFV TVPISGVISA 420
  421 AIMAVFKYII L