YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76627899
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	68	0.92
Non-Cytoplasmic	69	75	0.76
Transmembrane Helix	76	96	0.95
Cytoplasmic	97	116	0.98
Transmembrane Helix	117	137	0.97
Non-Cytoplasmic	138	144	0.88
Transmembrane Helix	145	163	0.94
Cytoplasmic	164	172	0.74
Transmembrane Helix	173	191	0.93
Non-Cytoplasmic	192	206	0.81
Transmembrane Helix	207	225	0.83
Cytoplasmic	226	232	0.68
Transmembrane Helix	233	252	0.93
Non-Cytoplasmic	253	262	0.67
Transmembrane Helix	263	285	0.78
Cytoplasmic	286	304	0.68
Transmembrane Helix	305	327	0.89
Non-Cytoplasmic	328	333	0.64
Transmembrane Helix	334	353	0.60
Cytoplasmic	354	394	0.61
Transmembrane Helix	395	416	0.85
Non-Cytoplasmic	417	423	0.51
Transmembrane Helix	424	444	0.56
Cytoplasmic	445	498	0.70
Transmembrane Helix	499	521	0.89
Non-Cytoplasmic	522	535	0.64
Transmembrane Helix	536	559	0.89
Cytoplasmic	560	631	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSSDSEAT LPEFMFCLCS LQPPQPWERR TLQPFTRARS FCKTHAGLFK KILLSLLCLA  60
   61 YAAYFLAACI LDFHRALALF VLTCLVLLVL VHRFLKRLFG EKLTRCLKPL ENSRLKFWMK 120
  121 WVLAGVSLIG LILWLALDTA QRPEQLISFA GICMFIIILF ACSKHHSAVS WRAVLWGLGL 180
  181 QFVFGILVIR TDPGFNAFQW LGEQVQIFLS YTVAGSSFVF GDVLVKDVFA FQALPIILFF 240
  241 GCVMSILYYL GLVQWVVQKI AWFLQITMGT TATETLAVAG NIFVGMTEAP LLIRPYLADM 300
  301 TLSEIHAVMT GGFATISGTV LGAFISFGID ASSLISASVM AAPSALALSK LVYPEVEESK 360
  361 FKNKEGVKLP RGKEKNVLEA ASNGATDAVG LASNVAANLI AFLAVLAFIN AALSWLGEMV 420
  421 DIQGLTFQVI CSYVLRPMVF MMGVEWADCP MVAEMVGMKF FTNEFVAYQQ LSQYKNKRLS 480
  481 GVEEWIEGKK QWISVRAEII TTFSLCGFAN LSSIGITLGG LTSMVPHRKS DLSKVVVSAL 540
  541 FTGACVSLIS ACVAGILYVP RGAETDCVSF LNTSFTNRTY ETYVCCRELF QSTSLNGTYN 600
  601 PPSFSGPWED KEFSAIALYN CCDLYTSAVC V