YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76628636
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALRAQPGT SDILFLLVKS LQLPDTARPP QPPFPARVSG PTESSRGEKA FGEGSARSPH  60
   61 ALRSASGLSG SGERVWFMML QRSDTPTHPL LGALGQREGE IYLRPPPQTG GVGPSRAIRR 120
  121 RHIQPRARGP SSAASRLLWR GSGLQELWER ICLRASSEPA AHPLPRWPGP APQPDLGGTA 180
  181 PSPAVRALGR AAPALAASGP AMDHQEPYSV QATAAIAAVI TFLILFTIFG NALVILAVLT 240
  241 SRSLRAPQNL FLVSLAAADI LVATLIIPFS LANELLGYWY FWRTWCEVYL ALDVLFCTSS 300
  301 IVHLCAISLD RYWAVSRALE YNSKRTPRRI KFIILIVWLI AAVISLPPLI YKGDQGPQPL 360
  361 ARPQCKLNQE AWYILASSIG SFFAPCLIMI LVYLRIYLIA KRSHCRGPRA KGGPGERESK 420
  421 QPHPVPGEVS DSAKLPTLAS QLATPGEANG CSQPRPGEKG DGETPEAPGT PALPPSWPAI 480
  481 PKSGQGQKEG VCGSSPEEEA EEEEEEGCEP QALPASPASA CSPPLQQPQG SRVLATLRGQ 540
  541 VLLGRGTGTA GAQWWRRRTQ LSREKRFTFV LAVVIGVFVL CWFPFFFSYS LGAICPQHCK 600
  601 VPHGLFQFFF WIGYCNSSLN PVIYTVFNQD FRRAFRRILC REWTQTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	213	0.87
Transmembrane Helix	214	239	0.90
Cytoplasmic	240	249	0.89
Transmembrane Helix	250	272	0.92
Non-Cytoplasmic	273	288	0.92
Transmembrane Helix	289	309	0.94
Cytoplasmic	310	329	0.89
Transmembrane Helix	330	351	0.93
Non-Cytoplasmic	352	372	0.96
Transmembrane Helix	373	397	0.85
Cytoplasmic	398	566	0.99
Transmembrane Helix	567	587	0.96
Non-Cytoplasmic	588	607	0.88
Transmembrane Helix	608	628	0.93
Cytoplasmic	629	648	0.96