YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.66
Transmembrane Helix	21	44	0.93
Cytoplasmic	45	171	0.66
Transmembrane Helix	172	191	0.91
Non-Cytoplasmic	192	201	0.63
Transmembrane Helix	202	220	0.77
Cytoplasmic	221	231	0.70
Transmembrane Helix	232	252	0.94
Non-Cytoplasmic	253	257	0.80
Transmembrane Helix	258	277	0.94
Cytoplasmic	278	342	0.98
Transmembrane Helix	343	364	0.90
Non-Cytoplasmic	365	371	0.81
Transmembrane Helix	372	392	0.92
Cytoplasmic	393	400	0.82
Transmembrane Helix	401	419	0.95
Non-Cytoplasmic	420	426	0.71
Transmembrane Helix	427	447	0.90
Cytoplasmic	448	458	0.71
Transmembrane Helix	459	480	0.90
Non-Cytoplasmic	481	487	0.79
Transmembrane Helix	488	508	0.92
Cytoplasmic	509	563	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTVDDVLEQ VGEFGWFQKQ TFLILCLLSA AFAPIYVGIV FLAFTPDHRC RSPGVAELSR  60
   61 RCGWSLAEEL NYTVPGPGPE SQCLRYEVDW NQSTLGCLDP LASLATNGSP LPLGPCEQGW 120
  121 VYDTPGSSIV TEFNLVCDDS WKVDLFQSCV NLGFFLGSLG VGYIADRFGR KVCLLATTLT 180
  181 CASLGVLTAV APDYTSLLIF RLLQGLVSKG SWTAGYTLIT EFVGLGYRRT VAILYQMAFT 240
  241 VGLVLLSGLA YILPHWRWLQ LAVSLPIFLL LFRFWFVPES PRWLLSQKRN TEAIKIMDHI 300
  301 AQKNGKLPPA DLKMLSLEED VTEKLSPSFI DLFRTPNLRK YTFILMYLWF TSSVVYQGLI 360
  361 MHVGATGGNL YLDFLYSALV EFPAGFIILV TIDRFGRRYP LATSNLAAGL ACFLMIFIPH 420
  421 DLPWLNIMVA CVGRMGITIV FQMVCLVNAE LFPTFIRNLG MMVCSSLCDL GGVLTPFLVF 480
  481 RLMEVWQGSP LILFAALGLV AGGMTLLLPE TKGVTLPETI EDAENLQRKA KPKENKIYLQ 540
  541 VQTSELNTQA AERDASQGTA QQK