YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115497202, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLIPAHHFR DIERKPEYLQ PEKCIPPPHP RPAGTMWFIR DGCGIACAIV TWFLVLYAEF  60
   61 VVLFVMLIPS RDYVYSVING LVFNLLAFLA LASHCRAMLT DPGAVPKGNA TKEFIESLQL 120
  121 KPGQVVYKCP KCCSIKPDRA HHCSVCKRCI RKMDHHCPWV NNCVGENNQK YFVLFTMYIA 180
  181 LISLHALIMV GFHFLHCFEE DWTKCSSFSP PTTVILLILL CFEGLLFLIF TSVMFGTQVH 240
  241 SICTDETGIE QLKKEERRWA KKTKWMNMKA VFGHPFSLGW ASPFATPDQG KADPYQYVV

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	61	0.79
Non-Cytoplasmic	62	73	0.70
Transmembrane Helix	74	95	0.87
Cytoplasmic	96	173	0.94
Transmembrane Helix	174	195	0.92
Non-Cytoplasmic	196	212	0.84
Transmembrane Helix	213	234	0.90
Cytoplasmic	235	264	0.92
Transmembrane Helix	265	285	0.54
Non-Cytoplasmic	286	299	0.60