YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76624658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVWRGKCN SDVCCRTECR IQEEVLLGHV KGRRGQNGLE LPPAAEATHR GPLHSLTIQP  60
   61 LQECSSVTME LLRPALPSYF LLTLLSIWTA ASEARAVSTG MPTISAASFL QNLMHRYGEG 120
  121 DSLTLQQLKA LLNHLDVGVG RGNISQPVQG PRNLSTCFSS GELFAAHNLS HQSQIGEREF 180
  181 QEFCPTILQQ LDSRACSSEN QENEENEQTE EGRPSSVEVW GYGLLCVTVI SLCSLLGASV 240
  241 VPFMKKTFYK RLLLYFIALA IGTLYSNALF QLIPEAFGFN PMEDYYVSKS AVVFGGFYLF 300
  301 FFTEKILKML LKQKNEHHHG HSHYTSETLP SQKDQEEGVT EKLQNGDLDH MIPQHCSGEL 360
  361 DGKTPVVDEK VIVGSLSVQD LQASQSACHW LKGVRYSDIG TLAWMITLSD GLHNFIDGLA 420
  421 IGASFTVSVF QGISTSVAIL CEEFPHELGD FVILLNAGMS LQQALFFNFL SACCCYVGLG 480
  481 FGILAGSHFS ANWIFALAGG MFLYISLADM FPEMNEVSQE DERKGSALIP FVIQNLGLLT 540
  541 GFGIMLVLTM YSGHIQIG

Type	Start	End	Confidence
Non-Cytoplasmic	1	218	0.86
Transmembrane Helix	219	241	0.93
Cytoplasmic	242	251	0.83
Transmembrane Helix	252	273	0.92
Non-Cytoplasmic	274	284	0.92
Transmembrane Helix	285	303	0.92
Cytoplasmic	304	463	0.82
Transmembrane Helix	464	485	0.91
Non-Cytoplasmic	486	490	0.55
Transmembrane Helix	491	511	0.88
Cytoplasmic	512	530	0.61
Transmembrane Helix	531	552	0.90
Non-Cytoplasmic	553	558	0.60