YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76624576
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPVKVPGLR NIFQETRHMD LEEAEELCDM EPVNSTEVSE FFLKGFSGYP ALEHLLFPLC  60
   61 SAMYLVTLLG NTGIVAVSVL DARLHTPMYF FLGNLSILDI CYTSTFVPLM LVHLLSAQKT 120
  121 ISFLGCALQM CLGLSTGSTE CLLLTIMAYD RYLAICRPLR YPVLMSHRLC WLLAGAAWVF 180
  181 CLFMSVTETV IAMRLPFCGH RVVSHFGCEI LAVLKLACGD TSISEVFLLV GAILLLPVPL 240
  241 AFICLSYTLI LATTLRVPSA AGRRKAFSTC SAHLAVVMLY YGTVIFMYMK PKSKEARISD 300
  301 EVFTVLYAVV TPMLNPVIYS LRNKEVKEAA RKVISVLFQP IYPPRVIQRD ISEKDYESRK 360
  361 AGSRREAYMA GDKEAEPREL GASILAHPST VCLLSLNFKL GREYESRKAG SRIDGYVAGD 420
  421 QEAGPRELGA SILAHPSTVC LL

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.53
Transmembrane Helix	55	80	0.80
Cytoplasmic	81	89	0.49
Transmembrane Helix	90	115	0.79
Non-Cytoplasmic	116	124	0.48
Transmembrane Helix	125	148	0.81
Cytoplasmic	149	168	0.59
Transmembrane Helix	169	191	0.87
Non-Cytoplasmic	192	228	0.62
Transmembrane Helix	229	251	0.90
Cytoplasmic	252	266	0.75
Transmembrane Helix	267	289	0.86
Non-Cytoplasmic	290	302	0.81
Transmembrane Helix	303	321	0.41
Cytoplasmic	322	442	0.52