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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76624236
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHIARPLLL LLAFFLHADA ETPPRFTRTP VDQTGVSGGV ASFICQATGD PRPKIVWNKK  60
   61 GKKVSNQRFE VIEFDDGSGS VLRIQPLRTP RDEAIYECVA SNNVGEISVS TRLTVLREDQ 120
  121 IPRGFPTIDM GPQLKVVERT RTATMLCAAS GNPDPEITWF KDFLPVDTSN NNGRIKQLRS 180
  181 GALQIEQSEE SDQGKYECVA TNSAGTRYSA PANLYVRVRR VPPRFSIPPT NHEIMPGGSV 240
  241 NITCVAVGSP MPYVKWMLGA EDLTPEDDMP IGRNVLELND VRQSANYTCV AMSTLGVIEA 300
  301 IAQITVKALP KPPGTPVVTE STATSITLTW DSGNPEPVSY YIIQHKPKNS EEPYKEIDGV 360
  361 ATTRYSVAGL SPYSDYEFRV VAVNNIGRGP PSEPVLTQTS EQAPSSAPRD VQARMLSSTT 420
  421 ILVQWKEPEE PNGQIQGYRV YYTMDPTQHV NNWMKHNVAD SQITTIGNLV PQKTYSVKVL 480
  481 AFTSIGDGPL SSDIQVITQT GGRSASEWGV GFAWEIPRAE EPVAFRYLER EKGRGRETQR 540
  541 ITIEPGTSYR LQGLRPNSLY YFRLAARSPQ GLGASTAEIS ARTMQSKPSA PPQDISCTSP 600
  601 SSTSILVSWQ PPPVDKQNGI ITEYSIKYTA VDGEDDKPHE ILGIPSDTTK YLLEQLEKWT 660
  661 EYRITVTAHT DVGPGPESLS VLIRTDEDVP SGPPRKVEVE AVNSTSVKVS WRSPVPNKQH 720
  721 GQIRGYQVHY VRMENGEPRG QPMLKDVMLA DAQDMIISGL QPETSYSLTV TAYTTKGDGA 780
  781 RSKPKLVSTT GAVPGRPRLV INHTQMNTAL IQWHPPVDTF GPLQGYRLKF GRKDVEPLTT 840
  841 LEFSEKEDHF TATDIHKGAS YIFRLSARNK VGFGEEMVKE ISVPEEVPTG FPQNLQSEGT 900
  901 TSTSTQLSWQ PPVLAERNGI ITKYTLLYRD INIPLLPVEQ LIVPADTTLT LSGLKPDTTY 960
  961 DVKVRAHTSK GPGPYSPSVQ FRTLPVNQVF AKNFHVKAVM KTSVLLSWEI PENYNSAMPF1020
 1021 KILYDDGKMV EEVDGRATQK LIVNLKPEKS YSFVLTNRGN SAGGLQHRVT AKTAPDVLRT1080
 1081 KPAFIGKTNL DGMITVQLPE VPANENIKGY YIIIVPLKKS RGKFIKPWES PDEMELDELL1140
 1141 KEISRKRRSL RHGREVELKP YIAAHFDVLP TEFTLGDDKH YGGFTNKQLQ SGQEYVFFVL1200
 1201 AVMEHAESKM YATSPYSDPV VSMDLDPQPI TDEEEGLIWV VGPVLAVVFI ICIVIAILLY1260
 1261 KRKRAESDSR KSSIPNSKEV PSHHPTDPVE LRRLNFQTPG SDDSGYPGNL HSSSMASHPP1320
 1321 IPILELADHI ERLKANDNLK FSQEYESIDP GQQFTWEHSN LEVNKPKNRY ANVIAYDHSR1380
 1381 VLLSAIEGIP GSDYVNANYI DGYRKQNAYI ATQGSLPETF GDFWRMIWEQ RSATVVMMTK1440
 1441 LEERSRVKCD QYWPSRGTET HGLVQVTLLD TVELATYCVR TFALYKNGSS EKREVRQFQF1500
 1501 TAWPDHGVPE HPTPFLAFLR RVKTCNPPDA GPMVVHCSAG VGRTGCFIVI DAMLERIKHE1560
 1561 KTVDIYGHVT LMRAQRNYMV QTEDQYIFIH DALLEAVTCG NTEVPARNLY AYIQKLTQIE1620
 1621 TGENVTGMEL EFKRLASSKA HTSRFISANL PCNKFKNRLV NIMPYESTRV CLQPIRGVEG1680
 1681 SDYINASFID GYRQQKAYIA TQGPLAETTE DFWRMLWEHN STIVVMLTKL REMGREKCHQ1740
 1741 YWPAERSARY QYFVVDPMAE YNMPQYILRE FKVTDARDGQ SRTVRQFQFT DWPEQGVPKS1800
 1801 GEGFIDFIGQ VHKTKEQFGQ DGPISVHCSA GVGRTGVFIT LSIVLERMRY EGVVDIFQTV1860
 1861 KMLRTQRPAM VQTEDQYQFC YRAALEYLGS FDHYAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle