YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76623127
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVNLCQAA GIRDGLALDL DAHQHLGDSV SGQAEINQGE IGQEEIHGGV EVEVCADGQD  60
   61 NQQVPHYRTG ICLAVDLGAA MRSVSLFLFS HVFLFFLFFF LIRLSHNMET KNQTDIAEFL 120
  121 LLGLSEDPEE QPLLFGLFLT IYLVTALGNL LIMLAIGSDS HLHTPMYFFL SHLSFTDLCF 180
  181 STTTVPKMLV NIERRSKSIS YTGCLTQVCF VLLFAGLENF LLAAMAYDRY VAICHPLRYV 240
  241 VIMNPCLCGL LILLSLVISS ADALLHTLMV FRLSFCTELE IPHFFCELDQ VIKVACSDTL 300
  301 INNIVVYLVT SILGGVPLLG IIFSYTQIVS SILRMPSAGG KYKAFSTCGS HLSVVSLFYG 360
  361 TAFGVYISSA LTHSSKETAI ASLMYTVVPP MLNPFIYSLR NRDMKQALRK LI

Type	Start	End	Confidence
Cytoplasmic	1	83	0.80
Transmembrane Helix	84	104	0.88
Non-Cytoplasmic	105	132	0.78
Transmembrane Helix	133	156	0.89
Cytoplasmic	157	165	0.67
Transmembrane Helix	166	186	0.75
Non-Cytoplasmic	187	202	0.61
Transmembrane Helix	203	223	0.83
Cytoplasmic	224	239	0.68
Transmembrane Helix	240	261	0.89
Non-Cytoplasmic	262	303	0.85
Transmembrane Helix	304	329	0.83
Cytoplasmic	330	346	0.84
Transmembrane Helix	347	367	0.89
Non-Cytoplasmic	368	377	0.76
Transmembrane Helix	378	399	0.87
Cytoplasmic	400	412	0.93