YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76621180
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.40
Transmembrane Helix	5	25	0.53
Cytoplasmic	26	31	0.48
Transmembrane Helix	32	54	0.64
Non-Cytoplasmic	55	55	0.46
Transmembrane Helix	56	79	0.78
Cytoplasmic	80	112	0.69
Transmembrane Helix	113	132	0.48
Non-Cytoplasmic	133	139	0.45
Transmembrane Helix	140	158	0.59
Cytoplasmic	159	166	0.79
Transmembrane Helix	167	184	0.96
Non-Cytoplasmic	185	190	0.76
Transmembrane Helix	191	210	0.93
Cytoplasmic	211	221	0.91
Transmembrane Helix	222	243	0.87
Non-Cytoplasmic	244	263	0.79
Transmembrane Helix	264	288	0.82
Cytoplasmic	289	309	0.70
Transmembrane Helix	310	334	0.60
Non-Cytoplasmic	335	412	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAVGVG AGAGGSGAAG GGGGGAREGA RVAALCLLWY ALSAGGNVVN KVILSAFPFP  60
   61 VTVSLCHILA LCAGLPPLLR AWRVPPAPPV SGPGPGPHQS SGPLLPPRFY PRYVLPLAFG 120
  121 KYFASVSAHV SIWKVPVSYA HTVKATMPIW VVLLSRIIMK EKQSTKVYLS LIPIISGVLL 180
  181 ATVTELSFDM WGLVSALAAT LCFSLQNIFS KKVLRDSRIH HLRLLNILGC HAIFFMIPTW 240
  241 VLVDLSAFLV SSDLTYVSQW PWTLLLLAVS GFCNFAQNVI AFSILNLISP LSYSVANATK 300
  301 RIMVITVSLI MLRNPVTSTN VLGMLTAILG VFLYNKTKYD ANQQARKHLL PVTTGDLSSK 360
  361 EHHRSPLEKP HNGTLFPPHS DYQYGRNNIL TDHFQYGRPS YPNSYTLNRY DV