YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76619924
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.85
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	90	0.99
Transmembrane Helix	91	115	0.81
Cytoplasmic	116	126	0.91
Transmembrane Helix	127	150	0.92
Non-Cytoplasmic	151	156	0.83
Transmembrane Helix	157	175	0.94
Cytoplasmic	176	228	0.99
Transmembrane Helix	229	249	0.91
Non-Cytoplasmic	250	266	0.93
Transmembrane Helix	267	288	0.90
Cytoplasmic	289	298	0.74
Transmembrane Helix	299	318	0.96
Non-Cytoplasmic	319	324	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAARGSGR ASAPGLFLVL LVPLLWAPAG VRAVPDEALS HRNKEPPAPA QQLQPQPAAV  60
   61 QGPEPARVEK GFTPAAPVHT NKDDPATQTN LGFIHAFVAA ISVIIVSELG DKTFFIAAIM 120
  121 AMRYNRLTVL AGAMLALGLM TCLSVLFGYA TTVIPRVYTY YVSTALFAIF GIRMLREGLK 180
  181 MSPDEGQEEL EEVQAELKKK DEEFQRTKLL NGPGDVETGT STTIPQKKWL HFISPIFVQA 240
  241 LTLTFLAEWG DRSQLTTIVL AAREDPYGVA VGGTVGHCLC TGLAVIGGRM IAQKISVRTV 300
  301 TIIGGIVFLA FAFSALFISP DSGF