YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76619208
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTKAAWQRV AETSSPEVIC AVSMTSGLCD GRGATWSAAG SPPLDRNPGA LEQPVPHGPE  60
   61 QGLLLGRRAG PPEEEQDLKI TDVIIGFQAC CWGYLARRCD NQSWLSPEDP SSGKVASLSP 120
  121 GSSSKLGADL CRCEHWGQNV KWMFAGCTMG IEQQTVGSAG EVTEGFSEEV MPDSGFAGRF 180
  181 VPYHVLVAQD EQSRQADIEI FFEEVIECLW DTLSREELLL LLNEFLERIK AEASLSREDT 240
  241 DELHNYLNEL KRVLVEEDQE RLSKEQLYRR RFLNKFPRVK RQLEEFIDKF HELADKVEKV 300
  301 HKGCTISNVM AHSTGAVSSI LTIVGLALTP MTMGASLALL ATGIGLGAAA GVTSVSTSII 360
  361 ERVKRSSAET EASRMMSTVV IKWEVLLEVL NNNPHIDATK KKEAIQCIEM HTHAMETGNA 420
  421 NPGSEANASI CMSPGRISGP AIQHIETGFK ATALTITKGA RIAGLAAAGV FLLVDVGFLV 480
  481 KESIHLHDGA KTEAAESLRR RAWELERKLE ELTQIYESQQ EDLS

Type	Start	End	Confidence
Cytoplasmic	1	308	0.92
Transmembrane Helix	309	329	0.87
Non-Cytoplasmic	330	336	0.68
Transmembrane Helix	337	357	0.92
Cytoplasmic	358	458	0.93
Transmembrane Helix	459	479	0.56
Non-Cytoplasmic	480	524	0.63