YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76616893
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAVGHPFL GGFQPAKPMP SSGTREPTSL QNGSSELCVQ MREPRQKEGP SGSPTVTLRS  60
   61 KQGRQGPGLR GDPSQGCRRG GTWQAPRGHR AARGGSRRAQ AGSPPDRGTA RPRSRGAGLG 120
  121 REAGSWAAAL PGSLVRPPAR PRHRPAKSAL AERPRPDGSA ELGGAGPTGR GRGRGRGRGS 180
  181 RLARQKSFPG VGCARGRTMN VFRILGDLSH LLAMILLLGK IWRSKCCAGI SGKSQILFAL 240
  241 VFTTRYLDLF TNFISIYNTV MKMVFLLCAY VTVYMIYGKF RKTFDSENDT FRLEFLLVPV 300
  301 IGLSFLENYS FTPLEILWTF SIYLESVAIL PQLFMISKTG EAETITTHYL FFLGLYRALY 360
  361 LANWIRRYQT ENFYDQIAVV SGVVQTIFYC DFFYLYVTKV LKGKKLSLPM PI

Type	Start	End	Confidence
Cytoplasmic	1	203	0.68
Transmembrane Helix	204	222	0.42
Non-Cytoplasmic	223	258	0.51
Transmembrane Helix	259	278	0.89
Cytoplasmic	279	289	0.86
Transmembrane Helix	290	309	0.79
Non-Cytoplasmic	310	315	0.68
Transmembrane Helix	316	336	0.77
Cytoplasmic	337	344	0.75
Transmembrane Helix	345	365	0.79
Non-Cytoplasmic	366	376	0.72
Transmembrane Helix	377	397	0.78
Cytoplasmic	398	412	0.84