YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T184B_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRGAALAP DPASPTTAAA SPSISVIPEG SPTAMEQPVF LMTTAAQAIS GFFVWTALLI  60
   61 TCHQIYMHLR CYSCPNEQRY IVRILFIVPI YAFDSWLSLL FFTNDQYYVY FGTVRDCYEA 120
  121 LVIYNFLSLC YEYLGGESSI MSEIRGKPIE SSCMYGTCCL WGKTYSIGFL RFCKQATLQF 180
  181 CVVKPLMAVS TVVLQAFGKY RDGDFDVTSG YLYVTIIYNI SVSLALYALF LFYFATRELL 240
  241 SPYSPVLKFF MVKSVIFLSF WQGMLLAILE KCGAIPKIHS ARVSVGEGTV AAGYQDFIIC 300
  301 VEMFFAALAL RHAFTYKVYA DKRVDAQGRC APMKSISSSL KETMNPHDIV QDAIHNFSPA 360
  361 YQQYTQQSTL EPGPTWRGGA HGLSRSHSLS GARDNEKTLL LSSDDEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.75
Transmembrane Helix	43	63	0.87
Cytoplasmic	64	79	0.85
Transmembrane Helix	80	102	0.86
Non-Cytoplasmic	103	213	0.62
Transmembrane Helix	214	235	0.92
Cytoplasmic	236	248	0.77
Transmembrane Helix	249	269	0.85
Non-Cytoplasmic	270	291	0.79
Transmembrane Helix	292	314	0.66
Cytoplasmic	315	407	0.84