YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76616667
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTQQPRALR NICDEGLVGM NVPPRPQPHA SSEALSYAGQ PAPREPACSQ AAPQSPPGPA  60
   61 GGERGPDPPP HPQQPPPRPQ RGVRPAALPG TEPGRARLLR PARSPAPFSG APSVPLRERC 120
  121 PPPPAPAGSD ASMEKSSSED SSIHRSPSLD SKDSDFAKPS TSGRPFGRGF TAGAFYGTAG 180
  181 SRGQSHAEAG VKTDKYNAPK GSKYVVFYLD LSFVFLLEFK KCNMARGCLC CLKYMMFLFN 240
  241 LIFWLCGCGL LGVGIWLSVS QGNFATFSPS FPSLSAANLV IAIGTIVMVT GFLGCLGAIK 300
  301 ENRCLLLSFF IVLLIILLAE LILIILFFVY MDKVNENAKK DLKEGLLLYN SENNVGLKNA 360
  361 WNIIQAEMHC CGVTDYKDWF SVLGENTVPD RCCMENSQGC GQNNTTLVWK TGCYEKVTQW 420
  421 FADNKHVLGT VGMCLLITQI LGMAFSMTLF QHIHRTGKKY DA

Type	Start	End	Confidence
Cytoplasmic	1	235	0.97
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	275	0.87
Transmembrane Helix	276	297	0.93
Cytoplasmic	298	304	0.85
Transmembrane Helix	305	328	0.91
Non-Cytoplasmic	329	426	0.99
Transmembrane Helix	427	450	0.90
Cytoplasmic	451	462	0.94