YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76615342
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTASPKPQ LSSRANAFSI AALMSSGGSK EKEATENTIK PLEQFVEKSS CTQPLGELTS  60
   61 LDAHGEFGGS GAGSSSPSSS SLCTEPLIPT TPIIPSEEMA KIACSLETKE LWDKFHELGT 120
  121 EMIITKSGRR MFPTIRVSFS GVDSEAKYIV LMDIVPVDNK RYRYAYHRSS WLVAGKADPP 180
  181 LPARLYVHPD SPFTGEQLLK QMVSFEKVKL TNNELDQHGH IILNSMHKYQ PRVHIIKKKD 240
  241 HTASLLNLKS EEFRTFIFPE TVFTAVTAYQ NQLITKLKID SNPFAKGFRD SSRLTDIERE 300
  301 SVESLIQKHS YARSPIRTYG GEEDVLGDEV QTTQNRGSAF TTSDNLSLSS WVSSSSSFPA 360
  361 FQHPQSLTAL GTSTASIATP IPHPIQGSLP PYSRLGMPLT PSAIASSMQG SGPTFPSFHM 420
  421 PRYHHYFQQG PYAAIQGLRH SSAVMTPFV

Type	Start	End	Confidence
Signal Peptide	1	28	0.64
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	449	0.98